Spectrophotometer DNA Quantification Curve: A Practical Guide
By Dr. Zubair Khalid, DVM, MS, PhD ·

Introduction to Spectrophotometric DNA Quantification
Spectrophotometric DNA quantification is the most widely used method for determining the concentration of nucleic acids in solution. The technique relies on the intrinsic property of DNA to absorb ultraviolet (UV) light, specifically at a wavelength of 260 nm. When a sample is placed in the path of a UV light beam, the amount of light absorbed is directly proportional to the number of nitrogenous bases present in the solution. This relationship forms the basis for converting an absorbance reading into a concentration value.
The concept of a spectrophotometer DNA quantification curve is central to understanding how this conversion works in practice. A standard curve is a graphical representation of the relationship between known DNA concentrations and their corresponding absorbance values. By generating this curve using a series of standards with known concentrations, you can determine the concentration of an unknown sample by measuring its absorbance and interpolating from the curve. In modern laboratories, the relationship is so well established that most spectrophotometers calculate concentration directly using the Beer-Lambert law, but understanding the underlying curve is essential for troubleshooting and for appreciating the limitations of the method.
What is a DNA Quantification Curve?
A DNA quantification curve is a plot of absorbance at 260 nm (A₂₆₀) on the y-axis against DNA concentration on the x-axis. For double-stranded DNA (dsDNA), this relationship is linear across a defined range, typically from 2 to 50 µg/mL when using a standard 10 mm path length cuvette. The curve is constructed by preparing a dilution series from a stock solution of known concentration, measuring the absorbance of each dilution, and plotting the data points. A best-fit line is then drawn through the points, and the slope of this line represents the extinction coefficient for DNA under the specific conditions used.
The utility of the curve extends beyond simple concentration determination. It also serves as a quality control tool. If your unknown sample produces an absorbance value that falls outside the linear range of the curve, you know immediately that the measurement is unreliable and that the sample requires dilution or concentration before accurate quantification can be achieved.
Why Use a Spectrophotometer for DNA Quantification?
Spectrophotometry offers several advantages over alternative methods. It is rapid, requiring only seconds per sample. It is non-destructive, meaning the sample can be recovered after measurement and used for downstream applications such as PCR, restriction digestion, or sequencing. It requires no specialized reagents beyond a buffer solution, making it cost-effective for routine use. Additionally, modern instruments such as the Nanodrop Spectrophotometer Thermo Scientific can measure samples as small as 1–2 µL, which is invaluable when working with limited quantities of DNA.
However, spectrophotometry measures all UV-absorbing molecules in the sample, not just DNA. This lack of specificity is the primary limitation of the method and is why purity ratios and alternative methods, which will be discussed later, are important considerations.
The Principle of Absorbance and Beer-Lambert Law
The Beer-Lambert law is the fundamental physical principle that underpins all spectrophotometric quantification. It describes how the attenuation of light passing through a solution depends on the concentration of the absorbing species and the path length of the light through the solution.
Beer-Lambert Law Equation
The Beer-Lambert law is expressed mathematically as:
A = ε × c × l
Where:
- A is the absorbance (also called optical density, OD), a dimensionless quantity
- ε (epsilon) is the molar extinction coefficient, with units of L·mol⁻¹·cm⁻¹
- c is the concentration of the absorbing species in mol/L
- l is the path length of the light through the sample, in cm
For a standard cuvette, the path length is 1 cm. The equation can be rearranged to solve for concentration:
c = A / (ε × l)
This linear relationship holds true only under specific conditions: the light must be monochromatic, the solution must be dilute enough that molecules do not interact with each other, and there must be no scattering or fluorescence. In practice, these conditions are met for DNA concentrations up to approximately 50 µg/mL in a 1 cm path length cuvette.
Extinction Coefficient for Double-Stranded DNA
The extinction coefficient for double-stranded DNA at 260 nm is approximately 50 (µg/mL)⁻¹·cm⁻¹ when expressed in mass terms, or 6,600 M⁻¹·cm⁻¹ when expressed in molar terms per base pair. The mass-based coefficient is more commonly used in laboratory calculations because it allows direct conversion from absorbance to concentration in µg/mL:
Concentration (µg/mL) = A₂₆₀ × 50 (for dsDNA)
This relationship means that a solution with an A₂₆₀ of 1.0 contains approximately 50 µg/mL of double-stranded DNA. For single-stranded DNA (ssDNA), the coefficient is approximately 33 (µg/mL)⁻¹·cm⁻¹, and for RNA it is approximately 40 (µg/mL)⁻¹·cm⁻¹. These values are approximations that assume an average base composition; the actual extinction coefficient varies slightly depending on the GC content of the DNA, as guanine and cytosine absorb UV light more strongly than adenine and thymine.
Constructing a Standard Curve for DNA Quantification
While modern spectrophotometers calculate DNA concentration directly from absorbance using the Beer-Lambert law, constructing a standard curve remains an important exercise for understanding the method and for validating instrument performance. The following protocol describes how to generate a reliable standard curve.
Preparation of DNA Standards
The first step is to prepare a series of DNA standards with known concentrations. You will need a stock solution of purified double-stranded DNA with a precisely known concentration. This stock is typically prepared by measuring the absorbance of a concentrated solution and calculating the concentration using the Beer-Lambert law, or by using a commercially available DNA standard of certified concentration.
- Prepare a dilution buffer: Use 10 mM Tris-HCl, pH 8.0, as the diluent. This buffer is preferred over water because it maintains a stable pH, which is important for consistent absorbance readings. Do not use TE buffer (Tris-EDTA) if you plan to use the standards for enzyme reactions later, as EDTA can chelate magnesium ions required by many enzymes.
- Create a dilution series: Label six microcentrifuge tubes as S1 through S6. Prepare a 100 µg/mL working solution by diluting your stock DNA in the Tris buffer. Then prepare serial dilutions as follows:
- S1: 50 µg/mL (500 µL of 100 µg/mL stock + 500 µL buffer)
- S2: 25 µg/mL (500 µL of S1 + 500 µL buffer)
- S3: 12.5 µg/mL (500 µL of S2 + 500 µL buffer)
- S4: 6.25 µg/mL (500 µL of S3 + 500 µL buffer)
- S5: 3.125 µg/mL (500 µL of S4 + 500 µL buffer)
- S6: 1.56 µg/mL (500 µL of S5 + 500 µL buffer)
- Include a blank: Prepare a separate tube containing only the dilution buffer. This will be used to zero the spectrophotometer.
Measuring Absorbance at 260 nm
Before measuring your standards, ensure the spectrophotometer is warmed up according to the manufacturer's instructions, typically 15–30 minutes. Set the wavelength to 260 nm and, if your instrument allows, also record absorbance at 280 nm and 230 nm for purity assessment.
- Blank the instrument: Place a cuvette containing only the dilution buffer into the spectrophotometer and press the "blank" or "zero" button. The instrument should read 0.000 absorbance at 260 nm.
- Measure each standard: Starting with the most dilute standard (S6) and working toward the most concentrated (S1), transfer an appropriate volume of each standard to a clean cuvette and record the absorbance at 260 nm. Rinse the cuvette with the next standard solution before measuring it to avoid carryover contamination.
- Record all readings: For each standard, record the A₂₆₀ value in a table alongside the known concentration. Also record A₂₈₀ and A₂₃₀ if you are assessing purity.
Plotting Absorbance vs. Concentration
Plot the A₂₆₀ values on the y-axis against the known concentrations on the x-axis. The resulting graph should show a linear relationship passing through or near the origin. Draw a best-fit straight line through the data points, either by eye or, preferably, using spreadsheet software with linear regression analysis.
The slope of this line represents the extinction coefficient for DNA under your specific conditions. For a properly calibrated instrument and accurate standards, the slope should be approximately 0.02 per µg/mL, which corresponds to the expected A₂₆₀ of 1.0 for a 50 µg/mL solution.
Using the Standard Curve to Determine Unknown DNA Concentration
Once you have constructed a reliable standard curve, you can use it to determine the concentration of unknown DNA samples. This process involves measuring the absorbance of the unknown sample and using the curve to convert that absorbance value to a concentration.
Interpolation from the Curve
To determine the concentration of an unknown sample:
- Measure the absorbance of the unknown sample at 260 nm, using the same buffer and cuvette as used for the standards.
- Locate the absorbance value on the y-axis of your standard curve.
- Draw a horizontal line from that point to the best-fit line.
- Draw a vertical line from the intersection point down to the x-axis.
- Read the concentration at the point where the vertical line meets the x-axis.
This graphical interpolation method works well but is subject to human error. A more precise approach is to use the equation of the best-fit line, which takes the form:
y = mx + b
Where y is the absorbance, x is the concentration, m is the slope, and b is the y-intercept. Rearranging to solve for concentration:
x = (y − b) / m
For example, if your standard curve has a slope of 0.02 and a y-intercept of 0.001, and your unknown sample gives an absorbance of 0.45, the concentration would be:
x = (0.45 − 0.001) / 0.02 = 22.45 µg/mL
Linear Regression and R² Value
When using spreadsheet software to generate your standard curve, the program will typically provide a linear regression equation and an R² value. The R² value, also called the coefficient of determination, indicates how well the data points fit the linear model. An R² value of 0.99 or higher indicates an excellent fit and gives you confidence in the accuracy of your interpolated concentrations.
If your R² value is significantly lower than 0.99, this suggests problems with your technique, such as pipetting errors, inaccurate standards, or measurements taken outside the linear range of the instrument. In such cases, the standard curve should be repeated before it is used for unknown samples.
Assessing DNA Purity with Absorbance Ratios
A significant advantage of spectrophotometric quantification is that it simultaneously provides information about sample purity. This is achieved by measuring absorbance at additional wavelengths and calculating ratios that indicate the presence of common contaminants.
A260/A280 Ratio
Proteins absorb UV light maximally at 280 nm due to the aromatic amino acids tryptophan and tyrosine. By measuring absorbance at both 260 nm and 280 nm, you can assess protein contamination in your DNA sample.
For pure double-stranded DNA, the A₂₆₀/A₂₈₀ ratio should be approximately 1.8. For pure RNA, the ratio should be approximately 2.0. If your DNA sample has a ratio significantly lower than 1.8, this indicates protein contamination. The presence of protein in the sample will also inflate the A₂₆₀ reading, leading to an overestimation of DNA concentration.
It is important to note that the pH of the solution affects this ratio. Measurements performed in water (pH 5–6) tend to give lower A₂₆₀/A₂₈₀ ratios than measurements performed in alkaline buffers (pH 8–9). For this reason, it is recommended to measure samples in 10 mM Tris-HCl, pH 8.0, to obtain consistent and comparable results.
A260/A230 Ratio
The A₂₆₀/A₂₃₀ ratio provides information about contamination with substances that absorb at 230 nm. These include:
- Phenol and guanidine hydrochloride, commonly used in DNA extraction kits
- Carbohydrates and polysaccharides
- EDTA and other chelating agents
- Chaotropic salts
For pure DNA, the A₂₆₀/A₂₃₀ ratio should be in the range of 2.0–2.2. Values significantly lower than this indicate contamination with one or more of the substances listed above. Such contaminants can inhibit downstream enzymatic reactions, even at concentrations that do not substantially affect the A₂₆₀ reading. Therefore, a low A₂₆₀/A₂₃₀ ratio should prompt additional purification steps before proceeding with sensitive applications.
The relationship between these purity ratios and the quantification curve is important to understand. A contaminated sample will produce an inflated A₂₆₀ reading, which will cause you to overestimate the DNA concentration when you interpolate from the standard curve. The purity ratios serve as a check on the validity of your concentration measurement.
Factors Affecting Accuracy of Spectrophotometric Quantification
Several factors can compromise the accuracy of spectrophotometric DNA quantification. Understanding these factors is essential for interpreting results correctly and for troubleshooting when measurements seem inconsistent.
Effect of pH and Ionic Strength
The absorbance spectrum of nucleic acids is pH-dependent. At acidic pH, the nitrogenous bases become protonated, which shifts their absorbance maximum and alters the extinction coefficient. At strongly alkaline pH, similar changes occur due to deprotonation. The result is that measurements taken in unbuffered water can vary significantly from measurements taken in a buffered solution.
Ionic strength also affects absorbance. High salt concentrations can cause DNA to adopt a more compact conformation, which reduces the effective absorbance due to base stacking interactions. This is why it is essential to measure all standards and unknown samples in the same buffer system. If you change buffers between measurements, your results will be inconsistent and your standard curve will be invalid.
Contaminants and Their Spectral Interference
Many substances commonly found in DNA preparations absorb UV light in the 230–280 nm range. The table below summarizes the spectral properties of common contaminants:
| Contaminant | Absorbance Peak (nm) | Effect on A₂₆₀ | Effect on Ratios |
|---|---|---|---|
| Protein | 280 | Overestimates concentration | Decreases A₂₆₀/A₂₈₀ |
| Phenol | 270 | Overestimates concentration | Decreases A₂₆₀/A₂₃₀ |
| Guanidine | 230 | Minimal direct effect | Decreases A₂₆₀/A₂₃₀ |
| EDTA | 230 | Minimal direct effect | Decreases A₂₆₀/A₂₃₀ |
| Carbohydrates | 230 | Minimal direct effect | Decreases A₂₆₀/A₂₃₀ |
| RNA | 260 | Overestimates dsDNA concentration | A₂₆₀/A₂₈₀ > 1.8 |
The presence of RNA in a DNA sample is a particular concern because RNA absorbs at the same wavelength as DNA. The A₂₆₀/A₂₈₀ ratio for RNA (approximately 2.0) is higher than for DNA (approximately 1.8), so a mixed sample will give an intermediate ratio. If you suspect RNA contamination, treat the sample with RNase A (10 µg/mL, incubated at 37°C for 30 minutes) and re-purify before quantification.
Alternative Methods and When to Use Them
While spectrophotometry is the default method for DNA quantification, it has limitations that make alternative methods preferable in certain situations. Understanding when to use each method is an important laboratory skill.
Fluorometry with Intercalating Dyes
Fluorometric quantification uses fluorescent dyes that bind specifically to double-stranded DNA. Common dyes include PicoGreen, Hoechst 33258, and SYBR Green I. When these dyes bind to DNA, their fluorescence increases dramatically, and the fluorescence intensity is proportional to the amount of DNA present.
The key advantage of fluorometry is specificity. These dyes bind to dsDNA but not to RNA, single-stranded DNA, or free nucleotides. This means that a sample contaminated with RNA will give an accurate dsDNA concentration, whereas spectrophotometry would overestimate the concentration. Fluorometry is also more sensitive, with detection limits in the picogram range, making it suitable for samples with very low DNA concentrations.
The disadvantages are that fluorometry requires additional reagents, a fluorometer or a plate reader with fluorescence capability, and a standard curve must be generated for each assay using a DNA standard of known concentration. The assay is also more time-consuming than a simple spectrophotometric reading.
Gel Electrophoresis and Densitometry
Gel electrophoresis followed by densitometric analysis is a semi-quantitative method that is often used to assess DNA concentration and quality simultaneously. In this method, DNA samples are loaded onto an agarose gel alongside a DNA ladder with bands of known concentration. After electrophoresis and staining with ethidium bromide or a safer alternative such as SYBR Safe, the intensity of the sample bands is compared visually or using imaging software to estimate concentration.
This method is particularly useful for assessing the integrity of the DNA (e.g., checking for degradation) and for estimating the concentration of specific DNA fragments after restriction digestion or PCR amplification. However, it is less accurate than spectrophotometry or fluorometry, with typical errors of 2–3-fold. The accuracy depends heavily on the quality of the DNA ladder and the linear range of the staining and imaging system.
For applications requiring precise quantification, such as preparing libraries for next-generation sequencing, fluorometry is preferred. For routine checks of DNA yield and quality, spectrophotometry is usually sufficient. The choice of method should be guided by the downstream application and the required accuracy.
Common Pitfalls and Troubleshooting
Even experienced researchers encounter problems with spectrophotometric DNA quantification. The following are common failure modes and practical solutions.
Incorrect Blanking
The most frequent error in spectrophotometric quantification is improper blanking. The blank solution must contain exactly the same buffer as the samples, and the cuvette used for blanking must be identical to the cuvettes used for measurements. If you blank with water but measure samples in Tris buffer, the absorbance readings will be offset by the absorbance of the buffer itself.
Another common error is failing to re-blank when changing buffers. If you measure standards in one buffer and then switch to a different buffer for unknown samples, you must re-blank with the new buffer. On instruments with a single cuvette holder, ensure the cuvette is clean and free of fingerprints or smudges before blanking.
Non-linear Range
The Beer-Lambert law is only valid within a specific absorbance range. For most spectrophotometers, this range is approximately 0.1 to 1.0 absorbance units. Below 0.1, the signal-to-noise ratio is poor, and the measurement is unreliable. Above 1.0, the relationship between absorbance and concentration becomes non-linear due to stray light and molecular interactions.
If your sample gives an absorbance above 1.0, dilute it and measure again. If the absorbance is below 0.1, concentrate the sample or use a cuvette with a longer path length. The Spectrophotometer DNA Quantification Kit often includes pre-dilution guidelines that help you stay within the linear range.
Pipetting Errors
Serial dilutions amplify pipetting errors. If you make a 5% error in the first dilution of a series, that error propagates through all subsequent dilutions. To minimize this risk:
- Use calibrated pipettes: Ensure pipettes are regularly serviced and calibrated.
- Use the correct pipette for the volume: Do not use a 1000 µL pipette to dispense 10 µL.
- Mix thoroughly: After each dilution step, mix the solution by pipetting up and down at least 10 times or by vortexing.
- Use fresh tips: Change tips between each dilution step to avoid carryover.
- Prepare duplicate or triplicate standards: This allows you to identify outliers and improves the reliability of your standard curve.
Cuvette Contamination
Residual material from previous samples can contaminate cuvettes and produce erroneous readings. After each measurement, rinse the cuvette thoroughly with the buffer being used. For stubborn contamination, wash with 0.1 M HCl followed by distilled water, then rinse with ethanol and allow to air dry. Never use abrasive cleaners on quartz or glass cuvettes, as scratches will scatter light and cause inaccurate readings.
Measuring at the Wrong Wavelength
It seems obvious, but it is surprisingly easy to measure at the wrong wavelength if the instrument has not been properly configured. Always verify that the wavelength is set to 260 nm before taking measurements. Some instruments allow you to set up a method that automatically measures at multiple wavelengths, which reduces the risk of error.
Summary and Best Practices
Spectrophotometric DNA quantification is a fundamental technique in molecular biology that relies on the Beer-Lambert law to relate absorbance at 260 nm to DNA concentration. The standard curve approach provides a visual and mathematical framework for understanding this relationship and for converting absorbance readings to concentration values.
Key Takeaways
- The Beer-Lambert law (A = εcl) is the basis for all spectrophotometric quantification.
- Double-stranded DNA has an extinction coefficient of approximately 50 (µg/mL)⁻¹·cm⁻¹, meaning an A₂₆₀ of 1.0 corresponds to 50 µg/mL.
- A standard curve is constructed by measuring the absorbance of known DNA concentrations and plotting absorbance against concentration.
- The A₂₆₀/A₂₈₀ ratio (approximately 1.8 for pure dsDNA) indicates protein contamination.
- The A₂₆₀/A₂₃₀ ratio (2.0–2.2 for pure DNA) indicates contamination with chaotropic salts, phenol, or carbohydrates.
- Spectrophotometry measures all UV-absorbing molecules, so purity assessment is essential for accurate quantification.
- Fluorometry with intercalating dyes is preferred when specificity for dsDNA is critical or when DNA concentration is very low.
Checklist for Accurate Quantification
- Use a buffered solution (10 mM Tris-HCl, pH 8.0) for all standards and samples.
- Blank the instrument with the same buffer used for samples.
- Prepare standards in the linear range (2–50 µg/mL for dsDNA in a 1 cm cuvette).
- Measure at 260 nm and record A₂₈₀ and A₂₃₀ for purity assessment.
- Plot the standard curve and verify that R² > 0.99.
- Check purity ratios before trusting concentration values.
- Dilute samples that give absorbance above 1.0 and re-measure.
- Use the linear regression equation to calculate unknown concentrations rather than reading from the graph.
Frequently Asked Questions
What is a spectrophotometer DNA quantification curve?
A spectrophotometer DNA quantification curve is a graph that plots the absorbance of DNA solutions at 260 nm against their known concentrations. It is constructed by measuring a series of DNA standards with known concentrations and plotting the resulting absorbance values. The curve demonstrates the linear relationship between absorbance and concentration as described by the Beer-Lambert law, and it is used to determine the concentration of unknown DNA samples by interpolating their absorbance values. The slope of the curve corresponds to the extinction coefficient of DNA, which is approximately 0.02 per µg/mL for double-stranded DNA in a 1 cm path length cuvette.
How do you make a DNA standard curve?
To make a DNA standard curve, prepare a dilution series of a DNA stock solution with known concentration. A typical series might include concentrations of 50, 25, 12.5, 6.25, 3.125, and 1.56 µg/mL in 10 mM Tris-HCl, pH 8.0. Blank the spectrophotometer with the buffer alone, then measure the absorbance of each standard at 260 nm. Plot absorbance on the y-axis against concentration on the x-axis and fit a linear regression line to the data points. The equation of this line (y = mx + b) can then be used to calculate the concentration of unknown samples from their absorbance values.
Why is the A260/A280 ratio important in DNA quantification?
The A₂₆₀/A₂₈₀ ratio is important because it indicates the purity of a DNA sample with respect to protein contamination. Proteins absorb UV light at 280 nm due to the aromatic amino acids tryptophan and tyrosine, while DNA absorbs maximally at 260 nm. Pure double-stranded DNA has an A₂₆₀/A₂₈₀ ratio of approximately 1.8. A significantly lower ratio indicates protein contamination, which would cause the A₂₆₀ reading to be inflated and lead to an overestimation of DNA concentration. The ratio is also pH-dependent, so measurements should be performed in a buffered solution at pH 8.0 for consistent results.
What does A260/A230 ratio tell you?
The A₂₆₀/A₂₃₀ ratio indicates contamination with substances that absorb at 230 nm, including phenol, guanidine hydrochloride, EDTA, carbohydrates, and other chaotropic salts commonly used in DNA extraction protocols. Pure DNA has an A₂₆₀/A₂₃₀ ratio of approximately 2.0–2.2. A lower ratio suggests the presence of these contaminants, which can inhibit downstream enzymatic reactions even if they do not significantly affect the A₂₆₀ reading. If the ratio is low, additional purification is recommended before proceeding with sensitive applications.
Can I use a spectrophotometer to quantify RNA?
Yes, a spectrophotometer can be used to quantify RNA. RNA absorbs UV light at 260 nm just like DNA, but the extinction coefficient is different. For RNA, an A₂₆₀ of 1.0 corresponds to approximately 40 µg/mL, compared to 50 µg/mL for double-stranded DNA. The A₂₆₀/A₂₈₀ ratio for pure RNA is approximately 2.0, which is higher than the ratio for DNA. If you are quantifying RNA, be sure to use the correct conversion factor and purity ratio expectations. For applications requiring precise RNA quantification, such as RNA-seq library preparation, fluorometric methods using RNA-specific dyes may be more appropriate. See Near-optimal Rna-seq Quantification for more details on RNA quantification in the context of sequencing.
What is the Beer-Lambert law and how does it apply to DNA quantification?
The Beer-Lambert law states that absorbance (A) is directly proportional to the concentration of the absorbing species (c), the path length of the light through the sample (l), and the molar extinction coefficient (ε): A = εcl. In DNA quantification, this law allows you to convert an absorbance reading at 260 nm into a concentration value. For double-stranded DNA, the extinction coefficient is approximately 50 (µg/mL)⁻¹·cm⁻¹, so a solution with an A₂₆₀ of 1.0 contains approximately 50 µg/mL of DNA when measured in a 1 cm path length cuvette. The law is valid only within a limited absorbance range (approximately 0.1–1.0), beyond which the relationship becomes non-linear.
Why is my DNA quantification curve not linear?
A non-linear DNA quantification curve can result from several factors. The most common causes are: (1) measurements taken outside the linear absorbance range (above 1.0 or below 0.1), (2) pipetting errors in the preparation of the dilution series, (3) inaccurate concentration of the stock DNA used to prepare standards, (4) contamination of standards with proteins or other UV-absorbing substances, (5) improper blanking, and (6) using a cuvette with a different path length than expected. If your curve is not linear, check each of these factors systematically. Also verify that the spectrophotometer is functioning correctly by measuring a known standard and comparing the result to the expected value.
Key Takeaways
- Spectrophotometric DNA quantification is based on the Beer-Lambert law, which relates absorbance at 260 nm to DNA concentration through the extinction coefficient of approximately 50 (µg/mL)⁻¹·cm⁻¹ for double-stranded DNA.
- A standard curve is constructed by measuring the absorbance of known DNA concentrations and plotting absorbance versus concentration; the resulting linear relationship allows interpolation of unknown concentrations.
- The A₂₆₀/A₂₈₀ ratio (approximately 1.8 for pure dsDNA) assesses protein contamination, while the A₂₆₀/A₂₃₀ ratio (2.0–2.2) assesses contamination with chaotropic salts, phenol, and carbohydrates.
- Spectrophotometry is non-specific and measures all UV-absorbing molecules; purity ratios are essential for validating concentration measurements.
- Measurements must be performed in a buffered solution at pH 8.0, within the linear absorbance range of 0.1–1.0, and with proper blanking to ensure accuracy.
- Fluorometry with intercalating dyes is preferred when specificity for dsDNA is critical, when RNA contamination is a concern, or when DNA concentrations are very low.
- Common sources of error include incorrect blanking, measurements outside the linear range, pipetting errors in serial dilutions, and cuvette contamination; systematic troubleshooting is essential for reliable results.